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Cheap Flights from Tokyo to Kota Kinabalu

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Compare Tokyo to Kota Kinabalu flight deals

Find the cheapest month or even day of the year to fly to Kota Kinabalu

Book the best Kota Kinabalu fare with no extra fees

Flight deals from Tokyo to Kota Kinabalu

Looking for a cheap last-minute deal or the best return flight from Tokyo to Kota Kinabalu? Find the lowest prices on one-way and return tickets right here.
Kota Kinabalu.Rs34,228 per passenger.Departing Mon, 18 Aug.One-way flight with Philippines AirAsia.Outbound indirect flight with Philippines AirAsia, departs from Tokyo Narita on Mon, 18 Aug, arriving in Kota Kinabalu.Price includes taxes and charges.From Rs34,228, select.
Kota Kinabalu.Rs35,902 per passenger.Departing Sun, 7 Sep.One-way flight with Philippines AirAsia.Outbound indirect flight with Philippines AirAsia, departs from Tokyo Narita on Sun, 7 Sep, arriving in Kota Kinabalu.Price includes taxes and charges.From Rs35,902, select.
Kota Kinabalu.Rs37,740 per passenger.Departing Wed, 15 Oct.One-way flight with Philippines AirAsia.Outbound indirect flight with Philippines AirAsia, departs from Tokyo Narita on Wed, 15 Oct, arriving in Kota Kinabalu.Price includes taxes and charges.From Rs37,740, select.
Kota Kinabalu.Rs38,055 per passenger.Departing Mon, 30 Jun.One-way flight with Philippines AirAsia.Outbound indirect flight with Philippines AirAsia, departs from Tokyo Narita on Mon, 30 Jun, arriving in Kota Kinabalu.Price includes taxes and charges.From Rs38,055, select.
Kota Kinabalu.Rs38,556 per passenger.Departing Wed, 16 Jul.One-way flight with Philippines AirAsia.Outbound indirect flight with Philippines AirAsia, departs from Tokyo Narita on Wed, 16 Jul, arriving in Kota Kinabalu.Price includes taxes and charges.From Rs38,556, select.
Kota Kinabalu.Rs38,932 per passenger.Departing Wed, 5 Nov.One-way flight with Scoot.Outbound indirect flight with Scoot, departs from Tokyo Narita on Wed, 5 Nov, arriving in Kota Kinabalu.Price includes taxes and charges.From Rs38,932, select.
Kota Kinabalu.Rs39,584 per passenger.Departing Wed, 22 Apr.One-way flight with Scoot.Outbound indirect flight with Scoot, departs from Tokyo Narita on Wed, 22 Apr, arriving in Kota Kinabalu.Price includes taxes and charges.From Rs39,584, select.
Kota Kinabalu.Rs42,800 per passenger.Departing Wed, 4 Feb.One-way flight with Scoot.Outbound indirect flight with Scoot, departs from Tokyo Narita on Wed, 4 Feb, arriving in Kota Kinabalu.Price includes taxes and charges.From Rs42,800, select.

Find the cheapest month to fly from Tokyo to Kota Kinabalu

We’re always keeping an eye on fares, so you can find the best one in seconds. It looks like Tokyo to Kota Kinabalu flights are currently cheapest in August.
Jun
from Rs38,055
Jul
from Rs38,556
Aug
from Rs34,228
Sep
from Rs35,902
Oct
from Rs37,740
Nov
from Rs38,932
Dec
from Rs47,694
Jan
from Rs42,800
Feb
from Rs42,800
Mar
from Rs42,800
Apr
from Rs39,584
May
from Rs64,851

Tokyo to Kota Kinabalu: Alternative routes

Compare routes from Tokyo to Kota Kinabalu below. You may find an airport to fly into that's cheaper, faster, or easier than Kota Kinabalu.

Tokyo to Kota Kinabalu: Flight information

The things to know before you go.
Cheapest flight foundRs34,228
Cheapest month to flyAugust

Finding cheap flights from Tokyo to Kota Kinabalu: Frequently asked questions

The best price we found for a return flight from Tokyo to Kota Kinabalu is Rs72,935. This is an estimate based on information collected from different airlines and travel providers over the last 4 days and is subject to change and availability.
Currently, there are no airlines that fly direct from Tokyo to Kota Kinabalu. But we found flights with one stop from Rs72,935.
As of June 2025, there are no flights flying from Tokyo to Kota Kinabalu.
The cheapest month to fly from Tokyo to Kota Kinabalu is usually June 2025.
After crunching the numbers on our flight calendar, we found that it is currently cheapest to fly from Tokyo to Kota Kinabalu Airport on Friday, 5 September 2025.
No airlines currently offer direct flights between Tokyo and Kota Kinabalu Airport. Most routes have one or more stops.
We show every price from over 1,200 airlines and travel agents, comparing them all so you don’t have to. If you know you want to fly to Kota Kinabalu but you’re not ready to book, set up a Price Alert. We’ll track prices for you, and let you know when they rise or fall.
We crunched all the numbers in our flight calendar and it looks like the cheapest time to book a flight to Kota Kinabalu is around 40 days in advance, so don’t leave your flight to the last minute.
The cheapest airline that flies to Kota Kinabalu is Philippines AirAsia .

Travelling from Tokyo to Kota Kinabalu International Airport (BKI): what you need to know

  • Get your holiday planning started by considering where you'll take off for your flight from Tokyo to Kota Kinabalu International Airport (BKI). Haneda Airport (HND) and Narita International Airport (NRT) are the two main airports in Tokyo.

  • Kota Kinabalu is 1 hour behind Tokyo. Kota Kinabalu International Airport is located in Kota Kinabalu, which operates on the UTC+8 timezone.

  • Haneda Airport (HND) to Kota Kinabalu International Airport (BKI) is the most popular route. There are 1 direct weekly departures to choose from. If you prefer a later start to the day, take the last flight with Malaysia Airlines at 09:30. Go for the first HND to BKI departure with Malaysia Airlines at 09:30 if you want to get going earlier.

  • To ensure you get on your flight from Tokyo to BKI, allow plenty of time for things like baggage drop and finding your gate. Arriving two hours ahead of international departures and an hour before domestic flights is the standard rule.

  • Be prepared for longer lines during popular months like June and other peak periods. Arriving up to four hours in advance for international flights and two hours for a domestic departure is a good idea.

Airports in Tokyo

Haneda Airport (HND)

  • Stopovers are the perfect opportunity to take a break from travelling — and perhaps even explore another city. When browsing flights from Tokyo to BKI leaving from Haneda Airport (HND), uncheck the 'Direct flights only' box to see where you can visit along the way. Here are some options to consider:

    • Taiwan Taoyuan International Airport (TPE)

    • Shanghai Pudong International Airport (PVG)

    • Hong Kong International Airport (HKG)

  • The distance from central Tokyo to HND is about 16 kilometres. Use Google Maps for the best route, whether in your own car or with public transport.

  • Need a handy hotel near Haneda Airport? If you're boarding an early flight from Tokyo to Kota Kinabalu International Airport, these accommodation options will have you moments from your departure lounge:

Narita International Airport (NRT)

  • Looking for more options for a direct flight from Tokyo to Kota Kinabalu International Airport (BKI)? Check out the fares departing from Narita International Airport (NRT).

  • From NRT, direct flights from Tokyo to BKI are offered by Malaysia Airlines.

  • Visit family or friends or just take a moment to freshen up with a stopover. If you'd like to split up your flight from Tokyo to Kota Kinabalu International Airport, here's where you can stop when taking off from Narita International Airport:

    • Taiwan Taoyuan International Airport (TPE)

    • Incheon International Airport (ICN)

    • Hong Kong International Airport (HKG)

  • The drive from central Tokyo to NRT generally takes 58 minutes, depending on traffic conditions. It's around 64 kilometres from the city centre to the airport.

  • You're going on holiday, so why not book another night away? Think about staying at one of these accommodation options near Narita International Airport the day before your flight from Tokyo to BKI:

About Kota Kinabalu International Airport (BKI)

Getting from Kota Kinabalu International Airport (BKI) to central Kota Kinabalu

  • From Kota Kinabalu International Airport, Kota Kinabalu is approximately 8 kilometres away. It takes around 14 minutes to get to the centre driving.

How to find the cheapest flights from Tokyo to Kota Kinabalu International Airport (BKI)

  • Book a one-way ticket from Tokyo to Kota Kinabalu International Airport from Rs34,228 or travel return from just Rs72,935. Fares listed are subject to change and may differ when you make your booking.

  • To score cheap tickets from Tokyo to BKI, book ahead. Airlines typically offer lower fares when flights are first made available.

  • Take advantage of the 'Whole month' tool and compare the prices of tickets from Tokyo to Kota Kinabalu International Airport across the entire month. The lowest fares are marked in green, so you can easily choose a flight that fits your budget.

  • Sign into your online account or use the app to set up a Price Alert. We'll notify you straight away if there's a new deal on this route. It's easy to do, and it'll save you time searching for a cheap ticket from Tokyo to BKI every day.

  • Personalise your trip using filters. Adjust the total duration, number of stops, and arrival and departure times to find the ideal flight from Tokyo to Kota Kinabalu International Airport. You can also sort the results to see the 'Best,' 'Fastest' or 'Cheapest' options first.

The best time to fly from Tokyo to Kota Kinabalu International Airport (BKI)

  • February is the quietest time to travel to Kota Kinabalu. Alternatively, join the crowds and go in August. This is the busiest month for flights from Tokyo to Kota Kinabalu International Airport, but the best time to go is your call.

  • The warmest month in Kota Kinabalu is May, with temperatures ranging between 24ºC and 31ºC. Book your flights from Tokyo to BKI in this month if you enjoy this type of weather.

  • Visit in February for cooler conditions. Temperatures average between 23ºC and 29ºC. However, this destination promises a good time whenever you book your cheap flights from Tokyo to Kota Kinabalu International Airport.

More about Kota Kinabalu

  • When it comes to looking for somewhere to lay your head, you'll find the best places to stay in Kota Kinabalu right here. Explore these options once you've locked in your flight from Tokyo to Kota Kinabalu International Airport:

  • Cool Bar and Orchid De Villa are a couple of popular attractions to put on your Kota Kinabalu itinerary. Keep the adventure rolling by checking out Sri Pasupathinath Alayam.

Complete your Kota Kinabalu trip with a car rental

  • We use the same magic that helped you find your cheap flight from Tokyo to Kota Kinabalu International Airport to track down your ideal ride. Check out our car rentals in Kota Kinabalu and compare your options in one place. Plus you'll find all the info you need to know, from the most popular rental company to the average daily price.

Plan the rest of your trip from Tokyo to Kota Kinabalu

Prices shown on this page are estimated lowest prices only. Found in the last 45 days.