Cheap Flights from Panama City to San Juan

Copa
KLM

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Flight deals from Panama City to San Juan

Looking for a cheap last-minute deal or the best return flight from Panama City to San Juan? If you want to travel next month, return fares start from Rs128,449. Find the lowest prices on one-way and return tickets right here.

Find the cheapest month to fly from Panama City to San Juan

We’re always keeping an eye on fares, so you can find the best one in seconds. It looks like Panama City to San Juan flights are currently cheapest in November.

Direct flights from Panama City to San Juan

Copa
KLM

Panama City to San Juan: Flight information

The things to know before you go.
Cheapest flight foundRs39,058
Cheapest month to flyNovember
Average flight time2 hrs, 49 mins
Most popular airlineCopa
Average flights per week156

Finding cheap flights from Panama City to San Juan: Frequently asked questions

There are 6 airports in San Juan: San Juan Isla Grande, San Juan Luis Munoz Marin, Roosevelt Roads, Ponce, Vieques, and Culebra.
The best price we found for a return flight from Panama City to San Juan is Rs61,166. This is an estimate based on information collected from different airlines and travel providers over the last 4 days and is subject to change and availability.
2 hours and 49 minutes is the average flight time from Panama City to San Juan.
Copa and KLM fly direct from Panama City to San Juan.
As of August 2026, there are 156 flights per week flying from Panama City to San Juan.
The cheapest month to fly from Panama City to San Juan is usually November.
If you're flying from Panama City, the cheapest airport near San Juan is San Juan Luis Munoz Marin – which is 11.3 km away from the centre of San Juan. We've found flights into this airport from Rs61,166.
After crunching the numbers on our flight calendar, we found that it is currently cheapest to fly from Panama City to San Juan on Thursday, 5 November 2026.
Yes – the average flight time is 2 hours and 49 minutes.
We show every price from over 1,200 airlines and travel agents, comparing them all so you don’t have to. If you know you want to fly to San Juan but you’re not ready to book, set up a Price Alert. We’ll track prices for you, and let you know when they rise or fall.

We crunched all the numbers in our flight calendar and it looks like the cheapest time to book a flight to San Juan is around 40 days in advance, so don’t leave your flight to the last minute.

In August, the average temperature is usually around 28°C. August is typically the warmest month in San Juan, when it usually averages around 29°C. You can expect the least rain in February. The coldest month is January, with temperatures averaging 23°C. The rainiest month is September.
The cheapest airline that flies to San Juan is Avianca. And the cheapest airline that flies to San Juan Luis Munoz Marin Airport is Copa.

Flying from Panama City to San Juan: what you need to know

  • Get your holiday planning started by considering the departure point for your flight from Panama City to San Juan. Panama City Tocumen International Airport (PTY) and Balboa Airport (BLB) are Panama City's main airports.

  • Come in for landing at San Juan Luis Munoz Marin Airport (SJU), the chief entry point to San Juan.

  • Jump on a direct Panama City to San Juan flight and you'll be travelling for an average of 2 hours 50 minutes.

  • San Juan's timezone is UTC-4, making San Juan one hour ahead of Panama City.

  • With 14 flights a week between the two airports, Panama City Tocumen International Airport (PTY) to San Juan Luis Munoz Marin Airport (SJU) is the busiest route. Hop on the first flight from Panama City to San Juan with Copa Airlines at 09:12. If you prefer to get more out of your day before flying, the latest flight from PTY to SJU is with Copa Airlines at 18:50.

  • For a stress-free journey, turn up at the airport two hours ahead of international flights and one hour before domestic departures. That way, you won't have to rush to board your Panama City to San Juan flight.

  • Be prepared for longer queues in popular months such as July. Arriving up to four hours in advance for an international flight and two hours for domestic departures is a good idea.

How to find the cheapest flights from Panama City to San Juan

  • Don't wait until the last minute. You're more likely to find cheap Panama City to San Juan flights if you book early. Airlines often offer some fantastic early bird discounts.

  • Finding cheap plane tickets from Panama City to San Juan is easy if you're flexible with your dates. Try using the 'Whole month' tool to see the lowest prices across every month and walk away with a sweet deal.

  • There's no need to check every day to see if prices have dropped when you set up a Price Alert. We'll update you the moment a better deal is available on cheap flights from Panama City to San Juan.

  • Find an affordable Panama City to San Juan flight with the help of our filters. Select your ideal departure time, duration and airlines, then sort the results by 'Cheapest' to see the best deals.

Flying from Panama City

Panama City Tocumen International Airport (PTY)

  • If you're searching for a direct flight from Panama City to San Juan, you can leave from Panama City Tocumen International Airport (PTY). Fly from PTY to San Juan Luis Munoz Marin Airport (SJU) in one seamless journey.

  • Check out the deals with Copa Airlines. This carrier offers direct Panama City to San Juan plane tickets from PTY.

  • We make it easy to book a Panama City to San Juan flight with a stopover. To see all your options departing from Panama City Tocumen International Airport, uncheck 'Direct flights only.' Next, pick a flight with a stop long enough to tour the city of your choice. Major stopovers include:

    • Medellin Jose Maria Cordova Airport (MDE)

    • Punta Cana Airport (PUJ)

    • Santo Domingo Las Americas Airport (SDQ)

  • PTY is around 18 kilometres from central Panama City. If you're driving, catching a taxi or ride-sharing from the centre, it'll take you 35 minutes or so to get there, depending on the traffic. If you're taking public transport, expect the travel time to be around 50 minutes.

  • Want a leisurely start to your trip? Stay near Panama City Tocumen International Airport. Whether you're boarding an early flight from Panama City to San Juan or just don't like being rushed, these hotels are ideal:

  • 88% of flights departing from Panama City Tocumen International Airport touch down at their destination as planned. Given its strong on-time performance, you're unlikely to face delays when taking off from PTY.

Balboa Airport (BLB)

  • Give yourself some time to stretch your legs during your Panama City to San Juan flight with a stopover. Bogota Airport (BOG) is one of the options between Balboa Airport and San Juan.

  • You can get to BLB from the centre of Panama City in about 10 minutes by car, depending on traffic conditions. The ride by public transport will take roughly 20 minutes to cover the 5 kilometres or so.

  • Want to enjoy an extra night away before boarding your flight from Panama City to San Juan? Unwind in a hotel near Balboa Airport before your trip officially starts. Stay at one of these accommodation options:

  • The majority of flights that leave Balboa Airport make it to their destination as planned. It achieves a consistent on-time performance rate of 88%.

Arriving in San Juan

San Juan Luis Munoz Marin Airport (SJU)

  • San Juan Luis Munoz Marin Airport (SJU) to central San Juan takes around 20 minutes to reach by car. The centre is roughly 11 kilometres away.

  • It typically takes 1 hour to get there when travelling by public transport.

  • The last thing you want is a lengthy journey to your hotel if you're landing late on a flight from Panama City to San Juan. Check in to one of these accommodation options near SJU instead:

  • Go wherever you want, whenever you want with a San Juan Luis Munoz Marin Airport rental car. Pick up your wheels from Sixt, Ace Rent a Car or U-Save and find adventure across San Juan and beyond.

  • Reserving your ride from San Juan Luis Munoz Marin Airport about two weeks in advance boosts your odds of scoring a great price.

San Juan Isla Grande Airport (SIG)

Best time to go to San Juan

  • March is the quietest month for flights from Panama City to San Juan, while July is the most popular. Work out the ideal time to go to San Juan based on whether you like a laid-back vibe or a more bustling atmosphere.

  • Lock in a Panama City to San Juan ticket departing in August if you're eager to visit the city during its warmest month. You can expect temperatures in San Juan to range from 24ºC to 32ºC.

  • For cooler conditions, search for a cheap flight from Panama City to San Juan in February when temperatures average between 21ºC and 28ºC.

More about San Juan

  • When it comes to looking for somewhere to lay your head, you'll find the best places to stay in San Juan right here. Check out these hotels after locking in your flight from Panama City to San Juan:

  • There are so many things to do and see in this city it can be tricky to work out where to begin. Balneario El Escambron, La Garita del morro de san juan bahia and Beach San Juan are top attractions which should be on any well-planned San Juan itinerary.

Explore more of Puerto Rico

  • Bayamon is just one of the many cities in Puerto Rico waiting to be discovered once you've seen the sights of San Juan. Around 13 kilometres to the southwest, check out popular attractions including Ron del Barrilito - Hacienda Santa Ana, Parque de las Ciencias by Toroverde Power by Claro and Parque Recreativo Río Bayamón.

  • If you're interested in discovering another side of Puerto Rico, consider Carolina, roughly 18 kilometres southeast of San Juan. Isla Verde Beach, Carolina Public Beach and Balneario Isla Verde are key reasons to visit.

Prices shown on this page are estimated lowest prices only. Found in the last 12 days.