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Cheap Flights from Manila Ninoy Aquino to El Nido

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Compare Manila Ninoy Aquino to El Nido flight deals

Find the cheapest month or even day of the year to fly to El Nido

Book the best El Nido fare with no extra fees

Flight deals from Manila Ninoy Aquino to El Nido

Looking for a cheap last-minute deal or the best return flight from Manila Ninoy Aquino to El Nido? Find the lowest prices on one-way and return tickets right here.
El Nido.Rs19,686 per passenger.Departing Thu, 28 Aug.One-way flight with Air Swift.Outbound direct flight with Air Swift departs from Manila Ninoy Aquino on Thu, 28 Aug, arriving in El Nido.Price includes taxes and charges.From Rs19,686, select.
El Nido.Rs19,718 per passenger.Departing Mon, 30 Jun.One-way flight with Air Swift.Outbound direct flight with Air Swift departs from Manila Ninoy Aquino on Mon, 30 Jun, arriving in El Nido.Price includes taxes and charges.From Rs19,718, select.
El Nido.Rs19,806 per passenger.Departing Tue, 9 Sep.One-way flight with Air Swift.Outbound direct flight with Air Swift departs from Manila Ninoy Aquino on Tue, 9 Sep, arriving in El Nido.Price includes taxes and charges.From Rs19,806, select.
El Nido.Rs19,825 per passenger.Departing Wed, 16 Jul.One-way flight with Air Swift.Outbound direct flight with Air Swift departs from Manila Ninoy Aquino on Wed, 16 Jul, arriving in El Nido.Price includes taxes and charges.From Rs19,825, select.
El Nido.Rs21,727 per passenger.Departing Thu, 29 May.One-way flight with Air Swift.Outbound direct flight with Air Swift departs from Manila Ninoy Aquino on Thu, 29 May, arriving in El Nido.Price includes taxes and charges.From Rs21,727, select.
El Nido.Rs24,448 per passenger.Departing Mon, 6 Oct.One-way flight with Royal Air Philippines.Outbound indirect flight with Royal Air Philippines, departs from Manila Ninoy Aquino on Mon, 6 Oct, arriving in El Nido.Price includes taxes and charges.From Rs24,448, select.
El Nido.Rs27,900 per passenger.Departing Tue, 10 Feb.One-way flight with Air Swift.Outbound direct flight with Air Swift departs from Manila Ninoy Aquino on Tue, 10 Feb, arriving in El Nido.Price includes taxes and charges.From Rs27,900, select.
El Nido.Rs29,211 per passenger.Departing Mon, 6 Oct.One-way flight with Air Swift.Outbound direct flight with Air Swift departs from Manila Ninoy Aquino on Mon, 6 Oct, arriving in El Nido.Price includes taxes and charges.From Rs29,211, select.

Find the cheapest month to fly from Manila Ninoy Aquino to El Nido

We’re always keeping an eye on fares, so you can find the best one in seconds. It looks like Manila Ninoy Aquino to El Nido flights are currently cheapest in August.
May
from Rs21,727
Jun
from Rs19,718
Jul
from Rs19,825
Aug
from Rs19,686
Sep
from Rs19,806
Oct
from Rs24,448
Nov
from Rs29,211
Dec
from Rs29,211
Jan
from Rs29,211
Feb
from Rs27,900
Mar
from Rs29,846
Apr
from Rs33,615

Direct flights from Manila Ninoy Aquino to El Nido

Manila Ninoy Aquino to El Nido: Alternative routes

Compare routes from Manila Ninoy Aquino to El Nido below. You may find an airport to fly into that's cheaper, faster, or easier than El Nido.

Manila to El Nido: Flight information

The things to know before you go.
Cheapest flight foundRs19,686
Cheapest month to flyAugust
Average flight time1 hr, 30 mins
Most popular airlineAir Swift
Average flights per week6

Finding cheap flights from Manila Ninoy Aquino to El Nido: Frequently asked questions

The best price we found for a return flight from Manila Ninoy Aquino to El Nido is Rs39,476. This is an estimate based on information collected from different airlines and travel providers over the last 4 days and is subject to change and availability.
1 hour and 30 minutes is the average flight time from Manila Ninoy Aquino to El Nido.
Air Swift flies direct from Manila Ninoy Aquino to El Nido.
As of May 2025, there are 6 flights per week flying from Manila Ninoy Aquino to El Nido.
The cheapest month to fly from Manila Ninoy Aquino to El Nido is usually May 2025.
After crunching the numbers on our flight calendar, we found that it's currently cheapest to fly from Manila Ninoy Aquino Airport to El Nido Airport on Saturday, 28 June 2025.
Yes – the average flight time is 1 hour and 30 minutes.
We show every price from over 1,200 airlines and travel agents, comparing them all so you don’t have to. If you know you want to fly to El Nido but you’re not ready to book, set up a Price Alert. We’ll track prices for you, and let you know when they rise or fall.
We crunched all the numbers in our flight calendar and it looks like the cheapest time to book a flight to El Nido is around 40 days in advance, so don’t leave your flight to the last minute.
Currently, Air Swift offers the cheapest flight tickets to El Nido.

Travelling from Ninoy Aquino International Airport (MNL) to El Nido Airport (ENI): what you need to know

  • Around 1 hour 30 minutes is how long you can expect to be in the air on a direct flight from Ninoy Aquino International Airport to El Nido Airport.

  • Every week, there are 35 Ninoy Aquino International Airport to El Nido Airport flights. If you prefer to jet off early, opt for the 05:10 AirSWIFT flight. If you'd rather make the most of your day before flying, the latest flight is at 13:50 with AirSWIFT.

  • Arrive at the airport on time so you don't miss your MNL to ENI flight. Be there at least two hours ahead for international flights and an hour early for domestic departures to avoid any last-minute rush.

  • Travelling during a peak time such as April? Major public holidays and other popular seasons can lead to longer lines and delays at check-in and security. Be extra cautious and get there up to four hours ahead of an international flight and two hours before a domestic departure.

  • AirSWIFT is your ticket to exploring El Nido (and maybe even some other exciting parts of Philippines!). Browse the direct flights from Ninoy Aquino International Airport to El Nido Airport offered by this popular airline.

  • AirSWIFT is the airline most travellers choose to fly with on this route.

How to find the cheapest flights from Ninoy Aquino International Airport (MNL) to El Nido Airport (ENI)

  • The lowest price we've seen for a one-way Ninoy Aquino International Airport to El Nido Airport flight is Rs19,686. A round-trip ticket is currently Rs39,476. Depending on the availability when you book, these fares can change.

  • Score cheap tickets from MNL to ENI by booking at least nine months ahead. According to our research, that's the sweet spot for landing a bargain.

  • August is the cheapest month for flights from Ninoy Aquino International Airport to El Nido Airport. If you're looking to travel at a different time of year, the 'Whole month' tool will show you the lowest prices across every month.

  • Never miss a deal on cheap flights from MNL to ENI by creating a Price Alert. We'll send you an email or notification through the app when a lower fare pops up.

  • Choose your preferred departure and arrival times, airlines and number of stops with the filters. Alternatively, sort your results by 'Cheapest' to get the best deals on flights from Ninoy Aquino International Airport to El Nido Airport.

Handy information about Ninoy Aquino International Airport (MNL)

  • 70.07% of flights taking off from Ninoy Aquino International Airport reach their destination on time.

  • Central Manila to Ninoy Aquino International Airport is around 13 kilometres. Depending on traffic, it'll take about 35 minutes to get there if you're driving, catching a cab or ride-sharing.

  • The journey when using public transport typically takes 1 hour 15 minutes.

  • Get your holiday off to a stress-free start by staying near MNL. Whether you're catching an early flight from Ninoy Aquino International Airport to El Nido Airport or just don't like being rushed, these stays are ideal:

Arriving at El Nido Airport (ENI)

  • If you have a late Ninoy Aquino International Airport to El Nido Airport flight, nothing beats the convenience of staying close to the terminal. Collect your bags from the carousel and then be showered and resting not long after at one of these accommodation options near ENI:

  • Go wherever you want, whenever you want with an El Nido Airport rental car. Pick up a set of wheels from Hertz, Dollar or Thrifty and venture far and wide through El Nido and beyond.

  • To get the lowest price, book your vehicle from El Nido Airport around four weeks before your trip.

Getting from El Nido Airport (ENI) to central El Nido

  • El Nido Airport is approximately 2 kilometres from the centre of El Nido. Driving there takes about 5 minutes.

  • It'll take around 15 minutes if you're travelling by public transport.

When to fly to El Nido Airport (ENI)

  • It's time to pick your trip dates for your flight from Ninoy Aquino International Airport to El Nido Airport. May is the busiest month to head to El Nido. If you want a more relaxed vibe, go in February.

  • The warmest month in El Nido is May, with temperatures ranging between 26ºC and 30ºC. Book your flights from Ninoy Aquino International Airport to El Nido Airport in this month if you like this kind of weather.

  • February sees average temperatures of between 25ºC and 29ºC. Search for cheap tickets from MNL to ENI around that time if you like cooler conditions.

Explore more of Philippines

  • Quezon City is just one of the many places in Philippines waiting to be explored once you've seen El Nido. Around 418 kilometres away to the north-east, check out popular attractions including Pinky Spikes, Province and GEE’s SPOT GARDEN by Gerard.

  • If you want to check out another major destination in Philippines, consider Manila, about 418 kilometres north-east of El Nido. Rizal Park, National Museum of Fine Arts and Fort Santiago are highlights.

Plan the rest of your trip from Manila to El Nido

Prices shown on this page are estimated lowest prices only. Found in the last 45 days.